plot_circos: Generate Perl Circos Plot
In umccr/rock: Rocking R at UMCCR

Description Usage Arguments Value Examples

Generates a Perl circos plot containing Manta structural variants and/or CNV calls.

1	plot_circos(outdir = "circos", name = "x")

`outdir`	Directory where the files are located, and where the plot will be written to.
`name`	Prefix of plot file (suffix: `_circos.png`) (default: `x`).

Generates a Perl circos plot in the outdir.

## Not run: 
manta <- system.file("extdata", "HCC2218_manta.vcf", package = "pebbles")
cnv <- system.file("extdata", "HCC2218_cnvkit-call.cns", package = "pebbles")
outdir <- "circos"

circos_prep(outdir, manta, cnvkit)
plot_circos(outdir, name = "foo")

## End(Not run)