prep_truth_seg: Read HCC2218 CNV Truth Set
In umccr/rock: Rocking R at UMCCR
Description
Usage
Arguments
Value
Examples
Description
Reads the HCC2218_truthset_cnv_bcbio.tsv file in the pebbles package and
exports the CNV segment coordinates.
Usage
1
prep_truth_seg(truth)
Arguments
truth
Path to truth set.
Value
A dataframe (tibble) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
Examples
1
2
cn <- system.file("extdata", "HCC2218_truthset_cnv_bcbio.tsv", package = "pebbles")
prep_truth_seg(cn)
umccr/rock documentation built on Oct. 11, 2020, 8:10 a.m.
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Description Usage Arguments Value Examples
Description
Reads the HCC2218_truthset_cnv_bcbio.tsv file in the pebbles package and
exports the CNV segment coordinates.
Usage
1 | prep_truth_seg(truth)
|
Arguments
truth |
Path to truth set. |
Value
A dataframe (tibble) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
Examples
1 2 | cn <- system.file("extdata", "HCC2218_truthset_cnv_bcbio.tsv", package = "pebbles")
prep_truth_seg(cn)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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