getMIRprofile: Get MIRprofile

In unistbig/bimir: Condition-Specific microRNA Target Prediction by Biclustering of Large Transcriptome Data

Description

Returns MIR profile for input miRNA.

Usage

getMIRprofile(miRNA, FCtable = NULL, FCcutoff = log2(1.3))

Arguments

miRNA	miRNA name. One of miRNAs listed in "miRNAlist" data.
FCtable	FC matrix of 20,639 genes for 5,158 conditions. If NULL, it will be loaded from the local.
FCcutoff	Fold change cutoff in log2 scale. Default = log2(1.3). To extract MIR profile for target down-regulation in test condition, take negative value.

Value

A matrix of fold change value of sequence-based miRNA targets under selected cell conditions.

Examples

fc=load_FCtable(); MIRprofile = getMIRprofile('hsa-miR-1-3p',fc,log2(1.3))

unistbig/bimir documentation built on May 29, 2019, 8:03 a.m.