make_biclust: Make all biclusters
In unistbig/bimir: Condition-Specific microRNA Target Prediction by Biclustering of Large Transcriptome Data
Description
Usage
Arguments
Value
Description
Make all biclusters
Usage
1
make_biclust(MIR_PROFILE, FCcutoff, REPETITION, STEP_NUMBER, ZERORATE)
Arguments
MIR_PROFILE
A matrix of MIR profile.
FCcutoff
Binarization fold change cutoff in log2-scale for MIR_PROFILE. Target up-regulation biclusters will be created for positive FC cutoff, and down-regulation biclusters will be generated with negative FC cutoff.
REPETITION
The number of running ensemble bicluster function.
STEP_NUMBER
The number of extension process
ZERORATE
Final zero rate allowed.
Value
list of seed and biclusters
unistbig/bimir documentation built on May 29, 2019, 8:03 a.m.
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Description Usage Arguments Value
Description
Make all biclusters
Usage
1 | make_biclust(MIR_PROFILE, FCcutoff, REPETITION, STEP_NUMBER, ZERORATE)
|
Arguments
MIR_PROFILE |
A matrix of MIR profile. |
FCcutoff |
Binarization fold change cutoff in log2-scale for MIR_PROFILE. Target up-regulation biclusters will be created for positive FC cutoff, and down-regulation biclusters will be generated with negative FC cutoff. |
REPETITION |
The number of running ensemble bicluster function. |
STEP_NUMBER |
The number of extension process |
ZERORATE |
Final zero rate allowed. |
Value
list of seed and biclusters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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