merge_bicluster: Merging similar biclusters
In unistbig/bimir: Condition-Specific microRNA Target Prediction by Biclustering of Large Transcriptome Data
Description
Usage
Arguments
Value
Description
Merging similar biclusters
Usage
1
2
merge_bicluster(MIR_profile, tree_cutoff = 0.5, biclusts, seedlist,
FCcutoff = log2(1.3), mir = "testmiRNA", ZERORATE)
Arguments
MIR_profile
binarized microRNA profile
tree_cutoff
Similarity cutoff
biclusts
list of extended biclusters
seedlist
list of seeds
FCcutoff
Fold change cutoff (in log2 sclale) for binarization of MIR profile
mir
Name of miRNA
ZERORATE
Final zero ratio allowed
Value
Extended bicluster list
unistbig/bimir documentation built on May 29, 2019, 8:03 a.m.
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Description Usage Arguments Value
Description
Merging similar biclusters
Usage
1 2 | merge_bicluster(MIR_profile, tree_cutoff = 0.5, biclusts, seedlist,
FCcutoff = log2(1.3), mir = "testmiRNA", ZERORATE)
|
Arguments
MIR_profile |
binarized microRNA profile |
tree_cutoff |
Similarity cutoff |
biclusts |
list of extended biclusters |
seedlist |
list of seeds |
FCcutoff |
Fold change cutoff (in log2 sclale) for binarization of MIR profile |
mir |
Name of miRNA |
ZERORATE |
Final zero ratio allowed |
Value
Extended bicluster list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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