plotly_graph: Plot an admixture graph using plotly

In uqrmaie1/admixtools: Inferring demographic history from genetic data

Plot an admixture graph using plotly

Description

Plot an admixture graph using plotly

Usage

plotly_graph(
  graph,
  collapse_threshold = 0,
  fix = FALSE,
  print_highlow = FALSE,
  highlight_unidentifiable = FALSE,
  pos = NULL,
  nudge_y = -0.1,
  annot = ""
)

Arguments

graph	An admixture graph
collapse_threshold	Collapse nodes if they are separated by less than this distance (for fitted graphs)
fix	If TRUE, there will be an attempt to rearrange the nodes to minimize the number of intersecting edges. This can take very long for large graphs. By default this is only done for graphs with fewer than 10 leaves.
highlight_unidentifiable	Highlight unidentifiable edges in red. Can be slow for large graphs. See unidentifiable_edges.
pos	Optional data frame with node coordinates (columns node, x, y)

Value

A plotly object

Examples

plotly_graph(example_graph)

uqrmaie1/admixtools documentation built on April 25, 2024, 11:30 a.m.