read_packedancestrymap | R Documentation |
Read genotype data from packedancestrymap files
read_packedancestrymap(
pref,
inds = NULL,
pops = NULL,
first = 1,
last = Inf,
transpose = FALSE,
verbose = TRUE
)
pref |
Prefix of the packedancestrymap files |
inds |
Individuals for which data should be read. Defaults to all individuals |
pops |
Populations for which data should be read. Cannot be provided together with 'inds' |
first |
Index of first SNP to read |
last |
Index of last SNP to read |
transpose |
Transpose genotype matrix (default is |
verbose |
Print progress updates |
A list with the genotype data matrix, the .ind
file, and the .snp
file
## Not run:
samples = c('Ind1', 'Ind2', 'Ind3')
geno = read_packedancestrymap(prefix, samples)
## End(Not run)
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