read_plink: Read genotype data from 'PLINK' files

In uqrmaie1/admixtools: Inferring demographic history from genetic data

Read genotype data from PLINK files

Description

See genio for a dedicated R package for reading and writing PLINK files. This function is based on a similar function in the plink2R package.

Usage

read_plink(pref, inds = NULL, pops = NULL, verbose = FALSE)

Arguments

pref	Prefix of packedancestrymap files (files have to end in .geno, .ind, .snp)
inds	Individuals for which data should be read. Defaults to all individuals
pops	Populations for which data should be read. Cannot be provided together with 'inds'
verbose	Print progress updates

Value

A list with the genotype data matrix, the .ind file, and the .snp file

Examples

## Not run: 
samples = c('Ind1', 'Ind2', 'Ind3')
geno = read_packedancestrymap(prefix, samples)

## End(Not run)

uqrmaie1/admixtools documentation built on Nov. 3, 2024, 12:56 a.m.