summarize_triples: Summarize triples across graphs

In uqrmaie1/admixtools: Inferring demographic history from genetic data

Summarize triples across graphs

Description

This function summarizes topologies of population triples across graphs.

Usage

summarize_triples(graphs)

Arguments

graphs

A list of graphs

Value

A data frame with one line for each population triple and columns summarizing the relationship of each triple across graphs.

• clade12: Fraction of graphs in which pop1 and pop2 form a clade

• x12: Fraction of graphs in which pop1 admixes into pop2 at the exclusion of pop3

• toptopo: A binary string representation of the most common topology. Digits represent x12, x21, x13, x31, x23, x32

• toptopocnt: The number of graphs in which toptopo was observed

• topos: The counts of all topologies

uqrmaie1/admixtools documentation built on Nov. 3, 2024, 12:56 a.m.