test_cladality: Test if two sets of populations form two clades
In uqrmaie1/admixtools: Inferring demographic history from genetic data
test_cladality R Documentation
Test if two sets of populations form two clades
Description
A thin wrapper around qpadm_p with rnk set to zero
Usage
test_cladality(f2_data, left, right, fudge = 1e-04, boot = FALSE, cpp = TRUE)
Arguments
left
Left populations (sources)
right
Right populations (outgroups)
fudge
Value added to diagonal matrix elements before inverting
boot
If FALSE (the default), block-jackknife resampling will be used to compute standard errors.
Otherwise, block-bootstrap resampling will be used to compute standard errors. If boot is an integer, that number
will specify the number of bootstrap resamplings. If boot = TRUE, the number of bootstrap resamplings will be
equal to the number of SNP blocks.
cpp
Use C++ functions. Setting this to FALSE will be slower but can help with debugging.
uqrmaie1/admixtools documentation built on Nov. 3, 2024, 12:56 a.m.
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| test_cladality | R Documentation |
Test if two sets of populations form two clades
Description
A thin wrapper around qpadm_p with rnk set to zero
Usage
test_cladality(f2_data, left, right, fudge = 1e-04, boot = FALSE, cpp = TRUE)
Arguments
left |
Left populations (sources) |
right |
Right populations (outgroups) |
fudge |
Value added to diagonal matrix elements before inverting |
boot |
If |
cpp |
Use C++ functions. Setting this to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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