Man pages for ut-ir-tools/irTools
R-tools for generating Utah's Integrated Report on water quality
| applyScreenTable | Apply screens to WQP data by selected table |
| asmntDashboard | Run the assessment dashboard application Runs the assessment... |
| assessEColi | Assess E.coli data at the year/site level. |
| assessExcCounts | Perform assessments based on sample & exceedance counts... |
| assessHFDO | Run HFDO assessments |
| assessLakeProfiles | Run lake profile assessments |
| assignCriteria | Assign numeric criteria to WQP data |
| autoValidateWQPsites | Auto-validate USEPA WQP stations |
| composeExport | Create dataset for secondary reviewer export from assessment... |
| countExceedances | Calculate sample and exceedance counts (conventional & toxic... |
| dataPrep | Final data prep step before assessments |
| fillMaskedValues | Select quantitation limits, determine detection condition,... |
| lakeDashboard | Run lake dashboard shiny app Runs lake dashboard shiny app... |
| prepAttains | Prepares rolled up AU-Use and AU-Use-Parameter assessments... |
| prepWQPData | Prep WQP Data |
| readWQPFiles | Read WQP Files |
| rollUp | Summarize assessments to different spatial resolutions |
| siteValApp | Run site validation shiny app Runs site validation shiny app... |
| updateCommentTable | Identify New WQP comment combinations and append them into IR... |
| updateDetCondLimTables | Update detection condition and limit type tables |
| updateLabActMediaTables | Update labNameActivityTable & activityMediaNameTable |
| updateMethodTrans | Update paramTransTable, paramFractionGroup, & WQPParamCASID... |
| updateParamTrans | Update paramTransTable, paramFractionGroup, & WQPParamCASID... |
| updateTable | Update translation workbook sheets with new combinations... |
| updateUnitConvTable | Update IR unit conversion table |
| validateSites | Validate monitoring locations for the IR |
