assessLakeProfiles: Run lake profile assessments

In ut-ir-tools/irTools: R-tools for generating Utah's Integrated Report on water quality

Run lake profile assessments

Description

Performs lake profile assessments per IR assessment methods. This includes identifying stratified profiles & applying appropriate assessment methods for stratified & non stratified profiles.

Usage

assessLakeProfiles(
  data,
  do_crit = list(`3A` = 4, `3B` = 3),
  temp_crit = list(`3A` = 20, `3B` = 27),
  uses_assessed = c("3A", "3B")
)

Arguments

data	Lake profiles object returned by dataPrep step.
do_crit	List of beneficial use classes and associated dissolved oxygen criteria to use for assessment. Defaults to list("3A"=5, "3B"=3). This excludes chronic & ELS present criteria per assessment methods. Sites with site specific criteria will be assessed regardless of criteria specified in this argument. Objects in this list should match the uses_assessed argument.
temp_crit	List of beneficial use classes and associated water temperature criteria to use for assessment. Defaults to list("3A"=20, "3B"=27). This excludes chronic & ELS present criteria per assessment methods. Sites with site specific criteria will be assessed regardless of criteria specified in this argument. Objects in this list should match the uses_assessed argument.
uses_assessed	Vector of beneficial uses to be assessed for lake profiles. Defaults to 3A & 3B uses.

Value

Returns a list of lake profile assessment dataframes. profile_asmnts_mlid_param contains site/parameter level profile assessments, profile_asmnts_individual contains assessments for each individual profile, profile_criteria contains the criteria used for the profile assessment (excluding any site-specific criteria that may have occurred in the input dataset), profiles_long contains profile data in long format including the numeric criterion associated with each parameter, profiles_wide contains profile data cast to wide format.

ut-ir-tools/irTools documentation built on Jan. 19, 2024, 6:55 p.m.