cum.plot: Cumulative frequency plot

In utnesp/cumulative.plot.R:

Usage

cum.plot(file.or.object, legend.position = c(0.8, 0.7), incl.mito.genes = F,
  cum.freq.out.file.txt = "", file.pdf = "", file.html = "",
  color.numbers.to.use = "", biotype.cutoff = "")

Arguments

file.or.object	Provide a .txt file or object where row.names are ensembl_gene_identifiers
legend.position	Position of legend within plot. Defaults to c(0.8, 0.7)
incl.mito.genes	Include mitochondrial genes in plot. Defaults to FALSE.
cum.freq.out.file.txt	If specified, writes out the cumulative frequencies to a file.
file.pdf	Where to store cum.plot. Defaults to getwd() and to filename "CPM.cumfreq.pdf".
file.html	Where to store cum.plot. Defaults to getwd() and to filename "CPM.cumfreq.html".
color.numbers.to.use	Specify colors to use for individual biotypes from the color palette brewer.pal.info[brewer.pal.info$category == 'qual',].
biotype.cutoff	How many biotypes to represent in the plot. Defaults to 10.

Author(s)

Peter Utnes [e-mail]

Examples

See https://github.com/utnesp/cumulative.plot.R

utnesp/cumulative.plot.R documentation built on May 15, 2019, 4:19 p.m.