vd4mmind/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.
Getting started
Browse package contents
Package details |
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| Author | Altuna Akalin, Matthias Kormaksson, Sheng Li |
| Bioconductor views | DNAMethylation |
| Maintainer | Altuna Akalin <aakalin@gmail.com> |
| License | Artistic-2.0 |
| Version | 0.9.2.0 |
| URL | http://code.google.com/p/methylkit/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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