percMethylation-methods: get percent methylation scores from methylBase object
In vd4mmind/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results
Description
Usage
Arguments
Value
Examples
Description
get percent methylation scores from methylBase object
Usage
1
percMethylation(methylBase.obj, rowids = FALSE)
Arguments
methylBase.obj
a methylBase object
rowids
if TRUE, matrix rownames have identifiers
as base/region location (default:FALSE)
Value
matrix with percent methylation values per base/region
across all samples, row names would be base/region
identifiers
Examples
1
2
3
data(methylKit)
mat=percMethylation(methylBase.obj)
head(mat)
vd4mmind/methylkit documentation built on May 3, 2019, 4:57 p.m.
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Description Usage Arguments Value Examples
Description
get percent methylation scores from methylBase object
Usage
1 | percMethylation(methylBase.obj, rowids = FALSE)
|
Arguments
methylBase.obj |
a methylBase object |
rowids |
if TRUE, matrix rownames have identifiers as base/region location (default:FALSE) |
Value
matrix with percent methylation values per base/region across all samples, row names would be base/region identifiers
Examples
1 2 3 | data(methylKit)
mat=percMethylation(methylBase.obj)
head(mat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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