normalizeCoverage-methods: normalize read coverage between samples
In vd4mmind/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results
Description
Usage
Arguments
Value
Author(s)
Examples
Description
The function normalizes coverage values between samples
using a scaling factor derived from differences between
mean or median of coverage distributions
Usage
1
normalizeCoverage(obj,method="median")
Arguments
obj
methylRawList object
method
a string "mean" or "median" which denotes
median or mean should be used to calculate scaling
factor. (Default:median)
Value
a methylRawList object
Author(s)
Altuna Akalin
Examples
1
2
data(methylKit)
newObj=normalizeCoverage(methylRawList.obj,method="median")
vd4mmind/methylkit documentation built on May 3, 2019, 4:57 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
The function normalizes coverage values between samples using a scaling factor derived from differences between mean or median of coverage distributions
Usage
1 | normalizeCoverage(obj,method="median")
|
Arguments
obj |
|
method |
a string "mean" or "median" which denotes median or mean should be used to calculate scaling factor. (Default:median) |
Value
a methylRawList object
Author(s)
Altuna Akalin
Examples
1 2 | data(methylKit)
newObj=normalizeCoverage(methylRawList.obj,method="median")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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