getData-methods: get the data slot from the methylKit objects
In vd4mmind/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results
Description
Usage
Arguments
Value
Examples
Description
The functions retrieves the table containing methylation
information from methylKit Objects. The data
retrived from this function is of a
data.frame. This is basically containing
all relevant methylation information per genomic region
or base.
Usage
1
getData(x)
Arguments
x
an
methylBase,methylRaw or
methylDiff object
Value
data frame for methylation events
Examples
1
2
3
4
5
6
7
8
9
10
data(methylKit)
# following commands show first lines of returned data.frames from getData() function
head(
getData(methylBase.obj)
)
head( getData(methylDiff.obj))
head(getData(methylRawList.obj[[1]]))
vd4mmind/methylkit documentation built on May 3, 2019, 4:57 p.m.
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Description Usage Arguments Value Examples
Description
The functions retrieves the table containing methylation
information from methylKit Objects. The data
retrived from this function is of a
data.frame. This is basically containing
all relevant methylation information per genomic region
or base.
Usage
1 | getData(x)
|
Arguments
x |
an
|
Value
data frame for methylation events
Examples
1 2 3 4 5 6 7 8 9 10 | data(methylKit)
# following commands show first lines of returned data.frames from getData() function
head(
getData(methylBase.obj)
)
head( getData(methylDiff.obj))
head(getData(methylRawList.obj[[1]]))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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