Files in vd4mmind/methylkit
DNA methylation analysis from high-throughput bisulfite sequencing results

.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/adjust.methylC.R R/annotate.R R/backbone.R R/batchControl.R R/bedgraph.R R/clusterSamples.R R/diffMeth.R R/document_data.R R/merge2.R R/normalizeCoverage.R R/percMethylation.R R/pool.R R/read.bismark.R R/regionalize.R R/reorganize.R R/updateMethObject.R
data/methylKit.RData
examples/example.R
exec/methCall.pl
inst/CITATION
inst/doc/Sweavel.sty
inst/doc/Vignette_methylKit.bib
inst/doc/methylKit.Rnw
inst/doc/methylKit.pdf
inst/extdata/control1.myCpG.txt
inst/extdata/control2.myCpG.txt
inst/extdata/cpgi.hg18.bed.txt
inst/extdata/generic1.CpG.txt
inst/extdata/refseq.hg18.bed.txt
inst/extdata/test.fastq_bismark.sorted.min.sam
inst/extdata/test.fastq_bismark.unsorted.min.sam
inst/extdata/test1.myCpG.txt
inst/extdata/test2.myCpG.txt
inst/scripts/create.data.R inst/tests/test-1-read.r inst/tests/test-2-unite.r inst/tests/test-3-clusterSamples.r inst/tests/test-4-calculateDiffMeth.r inst/tests/test-5-read.bismark.r inst/tests/test-6-regionCounts.r
man/.Rapp.history
man/PCASamples-methods.Rd man/adjust.methylC.Rd man/annotate.WithFeature-methods.Rd man/annotate.WithFeature.Flank-methods.Rd man/annotate.WithGenicParts-methods.Rd man/annotationByFeature-class.Rd man/annotationByGenicParts-class.Rd man/annotationByGenicParts-methods.Rd man/assocComp-methods.Rd man/bedgraph-methods.Rd man/calculateDiffMeth-methods.Rd man/clusterSamples-methods.Rd man/diffMethPerChr-methods.Rd man/extract-methods.Rd man/filterByCoverage-methods.Rd man/get.methylDiff-methods.Rd man/getAssembly-methods.Rd man/getContext-methods.Rd man/getCorrelation-methods.Rd man/getCoverageStats-methods.Rd man/getData-methods.Rd man/getFeatsWithTargetsStats-methods.Rd man/getFlanks-methods.Rd man/getMembers-methods.Rd man/getMethylationStats-methods.Rd man/getTargetAnnotationStats-methods.Rd man/methylBase-class.Rd man/methylBase.obj.Rd man/methylDiff-class.Rd man/methylDiff.obj.Rd man/methylRaw-class.Rd man/methylRawList-class.Rd man/methylRawList.obj.Rd man/normalizeCoverage-methods.Rd man/percMethylation-methods.Rd man/plotTargetAnnotation-methods.Rd man/pool-methods.Rd man/read-methods.Rd man/read.bed-methods.Rd man/read.bismark-methods.Rd man/read.feature.flank-methods.Rd man/read.transcript.features-methods.Rd man/reconstruct-methods.Rd man/regionCounts.Rd man/removeComp-methods.Rd man/reorganize-methods.Rd man/select-methods.Rd man/show-methods.Rd man/tileMethylCounts-methods.Rd man/unite-methods.Rd man/updateMethObject.Rd tests/test-all.R
vd4mmind/methylkit documentation built on May 3, 2019, 4:57 p.m.