DimPlot.ClusterNames: DimPlot.ClusterNames

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

DimPlot.ClusterNames

Description

Plot UMAP with Cluster names.

Usage

DimPlot.ClusterNames(
  obj = combined.obj,
  ident = GetNamedClusteringRuns(obj = obj, v = FALSE)[1],
  reduction = "umap",
  title = ident,
  ...
)

Arguments

obj	Seurat object, Default: combined.obj
ident	identity used, Default: 'cl.names.top.gene.res.0.5'
reduction	UMAP, tSNE, or PCA (Dim. reduction to use), Default: 'umap'
title	Title of the plot, Default: ident
...	Pass any other parameter to the internally called functions (most of them should work).

Examples

## Not run: 
if (interactive()) {
  DimPlot.ClusterNames(obj = combined.obj)
}

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.