plot.CCA.sol: Plots the solution of a Canonical Correspondence Analysisis

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/plot.CCA.sol.R

Description

Plots the solution of a Canonical Correspondence Analysisis using similar parameters to the continuous biplot

Usage

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## S3 method for class 'CCA.sol'
plot(x, A1 = 1, A2 = 2, ShowAxis = FALSE, margin = 0,
                 PlotSites = TRUE, PlotSpecies = TRUE, PlotEnv = TRUE,
                 LabelSites = TRUE, LabelSpecies = TRUE, LabelEnv =
                 TRUE, TypeSites = "wa", SpeciesQuality = FALSE,
                 MinQualityVars = 0.3, dp = 0, pr = 0, PlotAxis =
                 FALSE, TypeScale = "Complete", ValuesScale =
                 "Original", mode = "a", CexSites = NULL, CexSpecies =
                 NULL, CexVar = NULL, ColorSites = NULL, ColorSpecies =
                 NULL, ColorVar = NULL, PchSites = NULL, PchSpecies =
                 NULL, PchVar = NULL, SizeQualSites = FALSE,
                 SizeQualSpecies = FALSE, SizeQualVars = FALSE,
                 ColorQualSites = FALSE, ColorQualSpecies = FALSE,
                 ColorQualVars = FALSE, SmartLabels = FALSE, ...)

Arguments

x
A1
A2
ShowAxis
margin
PlotSites
PlotSpecies
PlotEnv
LabelSites
LabelSpecies
LabelEnv
TypeSites
SpeciesQuality
MinQualityVars
dp
pr
PlotAxis
TypeScale
ValuesScale
mode
CexSites
CexSpecies
CexVar
ColorSites
ColorSpecies
ColorVar
PchSites
PchSpecies
PchVar
SizeQualSites
SizeQualSpecies
SizeQualVars
ColorQualSites
ColorQualSpecies
ColorQualVars
SmartLabels
...

Aditional graphical parameters.

Details

The plotting procedure is similar to the one used for continuous biplots including the calibration of the environmental variables.

Value

No value returned

Author(s)

Jose Luis Vicente Villardon

References

CCA

See Also

plot.ContinuousBiplot

Examples

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##---- Should be DIRECTLY executable !! ----

villardon/MultBiplotR documentation built on June 5, 2021, 8:55 a.m.