plot3d.ContinuousBiplot: Plots a classical biplot for continuous data

In villardon/MultBiplotR: Multivariate Analysis Using Biplots in R

Description

Plots a classical biplot for continuous data.

Usage

## S3 method for class 'ContinuousBiplot'
plot3d(x, A1 = 1, A2 = 2, A3 = 3, 
ShowAxis = TRUE, margin = 0, PlotVars = TRUE, PlotInd = TRUE, 
WhatInds = NULL, WhatVars = NULL, LabelVars = TRUE, 
LabelInd = TRUE, IndLabels = NULL, VarLabels = NULL,
mode = "a", CexInd = NULL, CexVar = NULL, ColorInd = NULL, 
ColorVar = NULL, LabelPos = 1, SmartLabels = FALSE, 
MinQualityInds = 0, MinQualityVars = 0.3, dp = 0, 
PredPoints = 0, PlotAxis = FALSE, TypeScale = "Complete", 
ValuesScale = "Original", SizeQualInd = FALSE, 
SizeQualVars = FALSE, ColorQualInd = FALSE, 
ColorQualVars = FALSE, PchInd = NULL, PchVar = NULL, 
PlotClus = FALSE, TypeClus = "ch", ClustConf = 1, 
ClustCenters = FALSE, UseClusterColors = TRUE, 
PlotSupVars = TRUE, ...)

Arguments

x	An object of class "ContinuousBiplot""
A1	Dimension for the first axis. 1 is the default.
A2	Dimension for the second axis. 2 is the default.
A3	Dimension for the third axis. 3 is the default.
ShowAxis	Logical variable to control if the coordinate axes should appear in the plot. The default value is FALSE because for most of the biplots its presence is irrelevant.
margin	Margin for the labels in some of the biplot modes (percentage of the plot width). Default is 0. Increase the value if the labels are not completely plotted.
PlotVars	Logical to control if the Variables (Columns) are plotted.
PlotInd	Logical to control if the Individuals (Rows) are plotted.
WhatInds	Logical vector to control what individuals (Rows) are plotted. (Can be also a binary vector)
WhatVars	Logical vector to control what variables (Columns) are plotted. (Can be also a binary vector)
LabelVars	Logical to control if the labels for the Variables are shown
LabelInd	Logical to control if the labels for the individuals are shown
IndLabels	A set of labels for the individuals. If NULL the default object labels are used
VarLabels	A set of labels for the variables. If NULL the default object labels are used
mode	Mode of the biplot: "p", "a", "b", "h", "ah" and "s".
CexInd	Size for the symbols and labels of the individuals
CexVar	Size for the symbols and labels of the variables
ColorInd	Color for the symbols and labels of the individuals
ColorVar	Color for the symbols and labels of the variables
LabelPos	Position of the labels in relation to the point. (Se the graphical parameter pos )
SmartLabels	Plot the labels in a smart way
MinQualityInds	Minimum quality of representation for an individual to be plotted
MinQualityVars	Minimum quality of representation for a variable to be plotted
dp	A set of indices with the variables that will show the projections of the individuals
PredPoints	A vector with integers. The row points listed in the vector are projected onto all the variables.
PlotAxis	Not Used
TypeScale	Type of scale to use : "Complete", "StdDev" or "BoxPlot"
ValuesScale	Values to show on the scale: "Original" or "Transformed"
SizeQualInd	Should the size of the row points be related to their qualities of representation (predictiveness)?
SizeQualVars	Should the size of the column points be related to their qualities of representation (predictiveness)?
ColorQualInd	Should the color of the row points be related to their qualities of representation (predictiveness)?
ColorQualVars	Should the color of the column points be related to their qualities of representation (predictiveness)?
PchInd	Symbol for the row points. See help(points) for details.
PchVar	Symbol for the column points. See help(points) for details.
PlotClus	Should the clusters be plotted?
TypeClus	Type of plot for the clusters. ("ch"- Convex Hull, "el"- Ellipse or "st"- Star)
ClustConf	Percent of points included in the cluster. only the ClusConf percent of the points nearest to the center will be used to calculate the cluster
ClustCenters	Should the cluster centers be plotted
UseClusterColors	Should the cluster colors be used in the plot
PlotSupVars	Should the supplementary variables be plotted?
...	Any other graphical parameters

Details

The parameters are the same as the ones for the 2D biblot.

Value

A 3D Biplot

Author(s)

Jose Luis Vicente Villardon

See Also

plot.ContinuousBiplot

Examples

data(Protein)
bip=PCA.Biplot(Protein[,3:11])
plot3d.ContinuousBiplot(bip, mode="s", margin=0.2, ShowAxis=FALSE)

villardon/MultBiplotR documentation built on June 5, 2021, 8:55 a.m.