plot3dCanonicalBiplot: 3D Canonical Biplot

In villardon/MultBiplotR: Multivariate Analysis Using Biplots in R

Description

Plots a 3D Canonical Biplot

Usage

plot3dCanonicalBiplot(Bip, A1 = 1, A2 = 2, A3 = 3, ScaleGraph = TRUE, 
PlotGroups = TRUE, PlotVars = TRUE, PlotInd = TRUE, LabelInd = TRUE, 
CexGroup = 1, PchGroup = 16, margin = 0.1, AddLegend = FALSE, 
ShowAxes = FALSE, LabelAxes = TRUE, LabelGroups = TRUE, PlotCircle = TRUE, 
ConvexHulls = FALSE, TypeCircle = "M", ColorGroups = NULL, ColorVars = NULL,
LegendPos = "topright", ColorInd = NULL, mode = "a", 
TypeScale = "Complete", ValuesScale = "Original", MinQualityVars = 0, 
dpg = 0, dpi = 0, PredPoints = 0, PlotAxis = FALSE, CexInd = NULL, 
CexVar = NULL, PchInd = NULL, PchVar = NULL, ColorVar = NULL, 
ShowAxis = TRUE, ColorAxis = "gray", ...)

Arguments

Bip	An object of class "Canonical Biplot"
A1	Dimension for the first axis. 1 is the default.
A2	Dimension for the second axis. 2 is the default.
A3	Dimension for the third axis. 3 is the default.
ScaleGraph	Reescale the coordinates to optimal matching.
PlotGroups	Shoud the group centers be plotted?
PlotVars	Should the variables be plotted?
PlotInd	Should the individuals be plotted?
LabelInd	Should the individuals be labeled?
CexGroup	Sizes of the points for the groups
PchGroup	Markers for the group
margin	margin for the graph
AddLegend	Should a legend with the groups be added?
ShowAxes	Should outside axes be shown?
LabelAxes	Should outside axes be labelled?
LabelGroups	Should the groups be labeled?
PlotCircle	Should the confidence regions for the groups be plotted?
ConvexHulls	Should the convex hulls containing the individuals for each group be plotted?
TypeCircle	Type of confidence region: Univariate (U), Bonferroni(B), Multivariate (M) or Classical (C)
ColorGroups	User colors for the groups. Default colors will be used if NULL.
ColorVars	User colors for the variables. Default colors will be used if NULL.
LegendPos	Position of the legend.
ColorInd	User colors for the individuals. Default colors will be used if NULL.
mode	Mode of the biplot: "p", "a", "b", "h", "ah" and "s".
TypeScale	Type of scale to use : "Complete", "StdDev" or "BoxPlot"
ValuesScale	Values to show on the scale: "Original" or "Transformed"
MinQualityVars	Minimum quality of representation for a variable to be plotted
dpg	A set of indices with the variables that will show the projections of the gorups
dpi	A set of indices with the variables that will show the projections of the individuals
PredPoints	A vector with integers. The group centers listed in the vector are projected onto all the variables.
PlotAxis	Not Used
CexInd	Size of the points for individuals.
CexVar	Size of the points for variables.
PchInd	Marhers of the points for individuals.
PchVar	Markers of the points for variables.
ColorVar	Colors of the points for variables.
ShowAxis	Should axis scales be shown?
ColorAxis	Color of the axis
...	Any aditional graphical parameters

Details

The parameters are the same as in the 2D Canonical Biplot.

Value

A 3D Canonical Biplot

Author(s)

Jose Luis Vicente Villardon

See Also

plot.Canonical.Biplot

Examples

data(wine)
X=wine[,4:21]
canbip=CanonicalBiplot(X, group=wine$Group)
plot3dCanonicalBiplot(canbip, TypeCircle="M")

villardon/MultBiplotR documentation built on June 5, 2021, 8:55 a.m.