Files in villegar/MetaPipe
A High-Performance Computing Pipeline for QTL Mapping of Large Ionomic and Metabolomic Datasets
.Rbuildignore
.github/.gitignore
.github/R-CMD-check-macOS.yaml
.github/workflows/R-CMD-check.yaml
.github/workflows/README.yaml
.github/workflows/pkgdown.yaml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
MetaPipe.Rproj
NAMESPACE
NEWS.md
R.ignore/hex-logo.R
R.ignore/pipeline-mpi.R
R.ignore/pipeline.R
R/.gitignore
R/data.R
R/metapipe.R
R/transformations.R
R/utils-assess-normality.R
R/utils-plot.R
R/utils-qtl.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
data-raw/father_riparia.R
data-raw/ionomics.R
data-raw/manual_inspection_ionomics.R
data-raw/prepare-map-documentation.R
data/father_riparia.rda
data/ionomics.rda
inst/extdata/father_riparia.csv
inst/extdata/ionomics.csv
inst/figures/assess-normality-graph.gv
inst/images/favicon/apple-touch-icon-120x120.png
inst/images/favicon/apple-touch-icon-152x152.png
inst/images/favicon/apple-touch-icon-180x180.png
inst/images/favicon/apple-touch-icon-60x60.png
inst/images/favicon/apple-touch-icon-76x76.png
inst/images/favicon/apple-touch-icon.png
inst/images/favicon/favicon-16x16.png
inst/images/favicon/favicon-32x32.png
inst/images/favicon/favicon.ico
inst/images/lab-2.png
inst/images/metapipe.png
man/MetaPipe-package.Rd
man/PCA.Rd
man/assess_normality.Rd
man/effect_plots.Rd
man/father_riparia.Rd
man/figures/HIST_5_LOG_2_B11.png
man/figures/HIST_6_ROOT_e_Na23.png
man/ionomics.Rd
man/load_raw.Rd
man/log_transformation.Rd
man/power_transformation.Rd
man/qtl_perm_test.Rd
man/qtl_scone.Rd
man/read.cross.Rd
man/replace_missing.Rd
man/root_transformation.Rd
man/transform_data.Rd
tests/testthat.R
tests/testthat/test-metapipe.R
tests/testthat/test-transformations.R
tests/testthat/test-utils-assess-normality.R
tests/testthat/test-utils-plot.R
tests/testthat/test-utils-qtl.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/HIST_1_NORM_T1.png
vignettes/HIST_2_LOG_2_T2.png
vignettes/assess-normality.Rmd
vignettes/load-raw-data.Rmd
vignettes/replace-missing-data.Rmd
