cln_haplo: Clean haplotypes
In villegar/RhAMPseq: rhAmpSeq data analysis pipeline

Search for haplotypes below a threshold for read length and set them to missing.

1	cln_haplo(hap, read_length = 5, missing = NA)

`hap`	haplotype data with the format: `X/Y:n,m`.
`read_length`	minimum read length to keep haplotype.
`missing`	default value for haplotypes below the `read_length`.

haplotype

cln_haplo("./.:0")
cln_haplo("4/2:34,24")
cln_haplo("2/2:71")
cln_haplo("4/2:2,1")
cln_haplo("2/2:4")

villegar/RhAMPseq documentation built on Aug. 12, 2021, 8:47 p.m.

villegar/RhAMPseq index

README.md

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