Files in vincent-van-hoef/Analysis5204
Analysis for NBIS support project #5204

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Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Multivariate/active_disease_vs_healthy_controls_Biplot_cor09.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Multivariate/active_disease_vs_healthy_controls_Loadings_Comp1_Top15.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Multivariate/active_disease_vs_healthy_controls_SamplePlot_2comp.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/GSEA/GSEA_PLOTS/active_disease_vs_healthy_controls_gseaplot_POST-TRANSLATIO.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/GSEA/GSEA_PLOTS/active_disease_vs_healthy_controls_gseaplot_SIGNALING_BY_NO.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/GSEA/active_disease_vs_healthy_controls_barplot.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/GSEA/active_disease_vs_healthy_controls_emap.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/Heatmap_Sig_Prots_Prots.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/active_disease_vs_healthy_controls_Top15_table.png

Report/Results/Plasma/Comparisons/active_disease_vs_healthy_controls/Univariate/active_disease_vs_healthy_controls_volcano_anova_posthoc.png

Report/Results/Plasma/Correlation/bvas/regression_plots/DNER_bvas_correlation.png

Report/Results/Plasma/Correlation/bvas/regression_plots/GDF-15_bvas_correlation.png

Report/Results/Plasma/Correlation/crp/regression_plots/IL6_regression.png

Report/Results/Plasma/Correlation/crp/regression_plots/SCF_regression.png

Report/Results/Plasma/Correlation/sr/regression_plots/CCL23_regression.png

Report/Results/Plasma/Correlation/sr/regression_plots/SCF_regression.png

Report/Results/Plasma/Cortisone/Cortisone_vs_No_Cortisone/Univariate/Cortisone_vs_No_Cortisone_Top15_table.png

Report/Results/Plasma/Cortisone/Cortisone_vs_No_Cortisone/Univariate/Cortisone_vs_No_Cortisone_volcano_anova_posthoc.png

Report/Results/Plasma/Cortisone/Cortisone_vs_No_Cortisone/Univariate/GSEA/Cortisone_vs_No_Cortisone_barplot.png

Report/Results/Plasma/Cortisone/Cortisone_vs_No_Cortisone/Univariate/GSEA/Cortisone_vs_No_Cortisone_emap.png

Report/Results/Plasma/Cortisone/Cortisone_vs_No_Cortisone/Univariate/GSEA/GSEA_PLOTS/Cortisone_vs_No_Cortisone_gseaplot_POSITIVE_REGULA.png

Report/Results/Plasma/Cortisone/Cortisone_vs_No_Cortisone/Univariate/GSEA/GSEA_PLOTS/Cortisone_vs_No_Cortisone_gseaplot_PROTEOLYSIS.png

Report/Results/Plasma/QC/plasma_CVIII_dist.png

Report/Results/Plasma/QC/plasma_INF_dist.png

Report/Results/Plasma/QC/plasma_olink_lum_pca.png

Report/Results/Plasma/QC/plasma_pca_100.png

Report/Results/Plasma/QC/plasma_qc.png

Report/Results/Serum/Comparisons/active_disease_vs_healthy_controls/Univariate/GSEA/active_disease_vs_healthy_controls_barplot.png

Report/acknowledgements.html

Report/assets/style.css

Report/closing-procedures.html

Report/correlation.html

Report/cortisone.html

Report/data-cleaning.html

Report/data-responsibility.html

Report/differential-expression.html

Report/image/Lightbulb2.png

Report/image/Live-code.png

Report/image/NBIS-logo.png

Report/image/Your-turn.png

Report/image/favicon.ico

Report/image/fyi.png

Report/index.html

Report/libs/crosstalk-1.1.1/css/crosstalk.css

Report/libs/crosstalk-1.1.1/js/crosstalk.min.js

Report/libs/datatables-binding-0.17/datatables.js

Report/libs/datatables-css-0.0.0/datatables-crosstalk.css

Report/libs/dt-core-1.10.20/css/jquery.dataTables.extra.css

Report/libs/dt-core-1.10.20/css/jquery.dataTables.min.css

Report/libs/dt-core-1.10.20/js/jquery.dataTables.min.js

Report/libs/gitbook-2.6.7/css/fontawesome/fontawesome-webfont.ttf

Report/libs/gitbook-2.6.7/css/plugin-bookdown.css

Report/libs/gitbook-2.6.7/css/plugin-clipboard.css

Report/libs/gitbook-2.6.7/css/plugin-fontsettings.css

Report/libs/gitbook-2.6.7/css/plugin-highlight.css

Report/libs/gitbook-2.6.7/css/plugin-search.css

Report/libs/gitbook-2.6.7/css/plugin-table.css

Report/libs/gitbook-2.6.7/css/style.css

Report/libs/gitbook-2.6.7/js/app.min.js

Report/libs/gitbook-2.6.7/js/clipboard.min.js

Report/libs/gitbook-2.6.7/js/jquery.highlight.js

Report/libs/gitbook-2.6.7/js/lunr.js

Report/libs/gitbook-2.6.7/js/plugin-bookdown.js

Report/libs/gitbook-2.6.7/js/plugin-clipboard.js

Report/libs/gitbook-2.6.7/js/plugin-fontsettings.js

Report/libs/gitbook-2.6.7/js/plugin-search.js

Report/libs/gitbook-2.6.7/js/plugin-sharing.js

Report/libs/header-attrs-2.7/header-attrs.js

Report/libs/htmlwidgets-1.5.3/htmlwidgets.js

Report/libs/jquery-3.5.1/jquery.min.js

Report/libs/panelset-0.2.6/panelset.css

Report/libs/panelset-0.2.6/panelset.js

Report/material-and-methods.html

Report/quality-control.html

Report/search_index.json

_bookdown.yml

_output.yml

acknowledgements.Rmd

analysis/Dockerfile

analysis/analysis.R

assets/style.css

closing.Rmd correlation.Rmd cortisone.Rmd data-raw/Luminex.R data-raw/gsea_sets.R data-raw/plasma_metadata.R data-raw/plasma_npx.R data-raw/serum_metadata.R data-raw/serum_npx.R

data/gsea_sets.rda

data/lum_dat.rda

data/plasma_metadata.rda

data/plasma_npx.rda

data/serum_metadata.rda

data/serum_npx.rda

data_responsibility.Rmd de.Rmd

image/Lightbulb2.png

image/Live-code.png

image/NBIS-logo.png

image/Your-turn.png

image/favicon.ico

image/fyi.png

image/scilife_logo.jpg

index.Rmd

inst/extdata/210303_Vasculitis.xlsx

inst/extdata/210429 all BVAS active disease final score only.xlsx

inst/extdata/210429_Vasculitis.xlsx

inst/extdata/211109_BVAS_all_active_AAV_patients.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit1_Plate1.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit1_Plate2.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit1_Plate3.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit1_Plate4.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit2_Plate1.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit2_Plate2.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit2_Plate3.xlsx

inst/extdata/ANCA_JohannaDahlqvist_Kit2_Plate4.xlsx

inst/extdata/Biomarkorer_vid_ANCA_plasma_NPX.xlsx

inst/extdata/Biomarkorer_vid_ANCA_serum_NPX.xlsx

inst/extdata/Human_GOBP_AllPathways_no_GO_iea_March_01_2021_symbol.gmt

man/figures/README-pressure-1.png

man/gsea_olink_run.Rd man/gsea_olink_viz.Rd man/gsea_sets.Rd man/olink_dist.Rd man/plasma_metadata.Rd man/plasma_npx.Rd man/serum_metadata.Rd man/serum_npx.Rd methods.Rmd organs.Rmd quality.Rmd tests/testthat.R tests/testthat/test-utils.r

vincent-van-hoef/Analysis5204 documentation built on June 24, 2022, 2:41 p.m.

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vincent-van-hoef/Analysis5204
Analysis for NBIS support project #5204

Files in vincent-van-hoef/Analysis5204
Analysis for NBIS support project #5204

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vincent-van-hoef/Analysis5204 Analysis for NBIS support project #5204

Files in vincent-van-hoef/Analysis5204 Analysis for NBIS support project #5204

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vincent-van-hoef/Analysis5204
Analysis for NBIS support project #5204

Files in vincent-van-hoef/Analysis5204
Analysis for NBIS support project #5204