In vincent-van-hoef/Analysis5204: Analysis for NBIS support project #5204

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

Analysis5204

The goal of Analysis5204 is to provide the code and data of the analysis #5204. Besides the resulting analysis, it is also an experiment to combine an R package structure with a containerized environment.

Installation

This will load the datasets for plasma and serum (NPX and metadata) into the global environment. These datasets have been preprocessed from the raw data. The code used to do this is contained in the data-raw folder.

# install.packages("devtools")
devtools::install_github("vincent-van-hoef/Analysis5204")

cd analysis/
docker build --build-arg CACHE_DATE="$(date)" -t analysis5204:0.1 .
cd ..
docker run --rm -ti -p 8787:8787 -e PASSWORD=admin -v $(pwd):/home/rstudio analysis5204:0.1