QC_GenotypingError: Detect genotyping errors

In vincentgarin/GWASToolBox: GWAS analysis

Description

Check if markers have more than two alleles.

Usage

QC_GenotypingError(mk.mat, parallel = FALSE, cluster = NULL)

Arguments

mk.mat	Character marker scores matrix with genotypes as row and markers as column. Rows and columns names must be the genotype and marker identifiers respectively. Marker scores must be coded using one letter per allele. For example, AA, CC, GG, TT, AC, AG, AT, CA, CG, CT, GA, GC, GT, TA, TC, TG. Missing values must be coded NA.
parallel	Logical value specifying if the function should be executed in parallel on multiple cores. Default = FALSE.
cluster	Cluster object obtained with the function makeCluster() from the parallel package. Default = NULL.

Value

Return:

prob.mk

Character vector containing the name of marker with more than two alleles.

Author(s)

Vincent Garin

Examples

Come later

vincentgarin/GWASToolBox documentation built on May 6, 2019, 8:59 p.m.