remove_small_sets: Remove gene sets where membership is smaller than a cutoff

In vitalinakomashko/parallelGO: Parallel Implementation for Extraction of GO Results

Description

remove_small_sets function removes sets that have fewer genes identifiers than min_set_size.

Usage

remove_small_sets(dat, min_set_size)

Arguments

dat	Data frame object with two columns: ENTREZ gene identifiers entrez and set labels set_label.
min_set_size	Positive integer that defines the minimum number of genes in a set. All sets that don't meet this criteria will be removed.

Value

Data frame object.

Examples

## Not run: 
data("human_symbol")
temp <- remove_small_sets(human_symbol, min_set_size = 30)

## End(Not run)

vitalinakomashko/parallelGO documentation built on May 18, 2019, 1:32 p.m.