collapseByInterProID: Collapse InterProScan output to one protein sequence feature...
In vitkl/ProtDomSeq: Work with InterPro Protein Domains and FASTA Sequences (UniProt)
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/collapseByInterProID.R
Description
Collapse InterProScan output to one protein sequence feature per InterProID (or other feature attribute)
Usage
1
collapseByInterProID(InterProScan_features, id_col = "Dbxref")
Arguments
InterProScan_features
GRanges, the output of readInterProGFF3, SubsetByInterProEntryType or addInterProEntryTypes function
id_col
character (1L) containing the name of the column which defines a feature attribute per which to collapse features (combination of Protein ID and this feature is used)
Value
GRanges-class object containing InterProScan output with all protein sequence features collapsed per InterProID (or other feature attribute). Ranges are reduced reduce, metadata is collapsed in one line and separated with "|".
Author(s)
Vitalii Kleshchevnikov
See Also
readInterProGFF3
Examples
1
InterProScan_domains_nonred = collapseByInterProID(InterProScan_features = InterProScan_domains, id_col = "Dbxref")
vitkl/ProtDomSeq documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/collapseByInterProID.R
Description
Collapse InterProScan output to one protein sequence feature per InterProID (or other feature attribute)
Usage
1 | collapseByInterProID(InterProScan_features, id_col = "Dbxref")
|
Arguments
InterProScan_features |
GRanges, the output of |
id_col |
character (1L) containing the name of the column which defines a feature attribute per which to collapse features (combination of Protein ID and this feature is used) |
Value
GRanges-class object containing InterProScan output with all protein sequence features collapsed per InterProID (or other feature attribute). Ranges are reduced reduce, metadata is collapsed in one line and separated with "|".
Author(s)
Vitalii Kleshchevnikov
See Also
readInterProGFF3
Examples
1 | InterProScan_domains_nonred = collapseByInterProID(InterProScan_features = InterProScan_domains, id_col = "Dbxref")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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