downloadFastaMixed: Download FASTA for a list of canonical (P04637) and isoform...
In vitkl/ProtDomSeq: Work with InterPro Protein Domains and FASTA Sequences (UniProt)
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/downloadFastaMixed.R
Description
Download FASTA for a list of canonical (P04637) and isoform (P04637-2) UniprotAC
Usage
1
downloadFastaMixed(uniprot_ac, file_name)
Arguments
uniprot_ac
character vector containg canonical, isoform UniprotAC, or UniprotAC-post-processed chain ID (P04591-PRO_0000261216)
file_name
file name and directory to save the result ("./dir/filename")
Details
downloadFasta is intended to download from Uniprot and write fasta sequence file (renaming the name of the sequence given by UniProt to UniprotAC only) given generic (P04637) or isoform (P04637-2) UniprotAC. If the file already contains the sequences for given UniprotAC you get a message, if some sequences are missing all sequences will be reloaded.
Value
nothing
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1
downloadFastaMixed(uniprot_ac = c("P04637", "P04637-2", "P04591-PRO_0000261216"), file_name = "my_canonical_and_isoform.fasta")
vitkl/ProtDomSeq documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/downloadFastaMixed.R
Description
Download FASTA for a list of canonical (P04637) and isoform (P04637-2) UniprotAC
Usage
1 | downloadFastaMixed(uniprot_ac, file_name)
|
Arguments
uniprot_ac |
character vector containg canonical, isoform UniprotAC, or UniprotAC-post-processed chain ID (P04591-PRO_0000261216) |
file_name |
file name and directory to save the result ("./dir/filename") |
Details
downloadFasta is intended to download from Uniprot and write fasta sequence file (renaming the name of the sequence given by UniProt to UniprotAC only) given generic (P04637) or isoform (P04637-2) UniprotAC. If the file already contains the sequences for given UniprotAC you get a message, if some sequences are missing all sequences will be reloaded.
Value
nothing
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1 | downloadFastaMixed(uniprot_ac = c("P04637", "P04637-2", "P04591-PRO_0000261216"), file_name = "my_canonical_and_isoform.fasta")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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