downloadFastaPostproc: Download FASTA for a list of post-processed chain ID (e.g....
In vitkl/ProtDomSeq: Work with InterPro Protein Domains and FASTA Sequences (UniProt)
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/downloadFastaPostproc.R
Description
Download FASTA for a list of post-processed chain ID (e.g. PRO_0000261216)
Usage
1
downloadFastaPostproc(postproc_id, file_name)
Arguments
file_name
file name and directory to save the result ("./dir/filename")
uniprot_ac
character vector containg post-processed chain ID
Details
function to download from Uniprot and write fasta sequence files (renaming the UniProt-given name of the sequence to proteinID-FeatureID: P04591-PRO_0000261216) given post-processed chain ID, such as PRO_0000261216. If the file already contains the sequences for given post-processed chain ID you get a message, if some sequences are missing all sequences will be reloaded.
Value
nothing
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1
downloadFastaPostproc(postproc_id = c("PRO_0000261216"), file_name = "my_post_processed_chain.fasta")
vitkl/ProtDomSeq documentation built on May 3, 2019, 8:08 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/downloadFastaPostproc.R
Description
Download FASTA for a list of post-processed chain ID (e.g. PRO_0000261216)
Usage
1 | downloadFastaPostproc(postproc_id, file_name)
|
Arguments
file_name |
file name and directory to save the result ("./dir/filename") |
uniprot_ac |
character vector containg post-processed chain ID |
Details
function to download from Uniprot and write fasta sequence files (renaming the UniProt-given name of the sequence to proteinID-FeatureID: P04591-PRO_0000261216) given post-processed chain ID, such as PRO_0000261216. If the file already contains the sequences for given post-processed chain ID you get a message, if some sequences are missing all sequences will be reloaded.
Value
nothing
Author(s)
Vitalii Kleshchevnikov
See Also
Examples
1 | downloadFastaPostproc(postproc_id = c("PRO_0000261216"), file_name = "my_post_processed_chain.fasta")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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