plotDEgeneOverlap: plot intersections of list of DE genes from multiple DESeq2...

In vivekbhr/vivlib: An R package for useful bioinformatics wrappers

Description

plot intersections of list of DE genes from multiple DESeq2 outputs

Usage

plotDEgeneOverlap(DEoutList, sampleNames, FDRcutoff = 0.05, outFile = NULL)

Arguments

DEoutList	A vector, with names of DESeq2 output files to use.
sampleNames	Name of samples corresponding to the DESeq output file list.
FDRcutoff	FDR cutoff to select DE genes from the list
outFile	Name of output pdf file. If NULL, prints output on the screen

Value

A plot of Intersection of gene sets.

Examples

## Not run: 
plotDEgeneOverlap(DEoutList, sampleNames, FDRcutoff = 0.05, outFile = NULL)

## End(Not run)

vivekbhr/vivlib documentation built on May 3, 2019, 6:13 p.m.