plotStackedBars: Plot Stacked barchart of DE genes using edgeR/DESeq2 output

In vivekbhr/vivlib: An R package for useful bioinformatics wrappers

Description

Plot Stacked barchart of DE genes using edgeR/DESeq2 output

Usage

plotStackedBars(DEoutput, fdr = 0.05, foldCh = "abs", sampleName = NULL,
  outFile = NULL)

Arguments

DEoutput	A tab-seperated edgeR/DESeq2 output file, using EdgeR_wrapper or DESeq_wrapper
fdr	FDR cutoff for DE genes
foldCh	Which scale of fold-change to plot. Choose from "abs" (absolute) and "log2" (log2).
sampleName	Samplename to print on the plot.
outFile	Output pdf file name. If not, plot will be printed on screen.

Value

Stacked bar chart of DE gene counts.

Examples

deout <- system.file("extdata", "edgeR_output_annotated.tsv", package="vivlib")
plotStackedBars <- function(DEoutput = deout)

vivekbhr/vivlib documentation built on May 3, 2019, 6:13 p.m.