Man pages for vjcitn/BiocBuildTools
Bioconductor software ecosystem building tools
| absent | list packages absent from current installation |
| add_dependencies-PackageSet-method | method for adding dependencies to PackageSet as determined by... |
| bbs_check_built | not exported, rely instead on rcmdcheck do check_built and... |
| bcclist_to_dataframes | helper function for extracting BiocCheck outputs |
| bco2df | convert BiocCheck output (just error and warning) to list of... |
| bioc_coreset | define a small collection of packages of interest |
| bioc_software_packagelist_old | get vector of Bioc software package names |
| build1 | prepare and build a package tarball, not exported because we... |
| build1_with_buildsink | run build1 and capture the R CMD build log |
| build_sqlite_db | use outputs of get_checks and get_bcc to build a database of... |
| check_PackageSet | longrunning R CMD check and BiocCheck of every package in a... |
| combine_status_dbs | add records from 'incoming' database to 'target' database |
| demo_bcchk_out | a list of BiocCheck::BiocCheck results for demonstration... |
| demo_rcmdcheck_out | a list of rcmdcheck::rcmdcheck results for demonstration... |
| display_events | simple app to present data on events gathered into a SQLite... |
| dot-bco2df | helper for bco2df |
| fulfill_deps | use BiocManager::install to get any unavailable dependencies... |
| full_dep_opts | a vector listing the key dependencies with correct... |
| get_bcc | use bco2df to acquire limited data frames from BiocCheck... |
| get_checks | run rcmdcheck on all sources associated with a PackageSet and... |
| get_checks2 | run rcmdcheck and BiocCheck on all sources associated with a... |
| getpk | use HTTPS to clone a package from Bioconductor git |
| installed_r | a vector of package names needed for a fairly complete BBS... |
| last_commit_date | use gert to get last commit date for a repo |
| local_gits_behind_bioc | check all repos in a folder for version entry less than the... |
| local_gits_with_uninstalled_dependencies | not clear that this is needed provide a list of packages for... |
| PackageSet | constructor for PackageSet instances |
| populate_local_gits | use git via BiocBBSpack::getpk to retrieve sources into a... |
| rcclist_to_dataframes | produce list of data.frames for storage of R CMD check... |
| status_db_init | initialize a status database |
| update_gits | attempt to identify packages that have had pushes since last... |
| update_status_db | add a dataframe, optionally purging related obsolete records,... |
