fulfill_deps: use BiocManager::install to get any unavailable dependencies...
In vjcitn/BiocBuildTools: Bioconductor software ecosystem building tools
fulfill_deps R Documentation
use BiocManager::install to get any unavailable dependencies as defined by BiocPkgTools
Description
use BiocManager::install to get any unavailable dependencies as defined by BiocPkgTools
Usage
fulfill_deps(pkg, depdf = NULL, exclude = "KEGG.db", ...)
Arguments
pkg
character(1) name of package
depdf
a data.frame like the output of BiocPkgTools::buildPkgDependencyDataFrame()
exclude
character() of uninstalled packages to be ignored – BiocManager::install is slow
to deal with an unavailable package
...
passed to BiocManager::install
Note
Function is used only for side-effect of installation. exclude defaults to
'KEGG.db' because in Bioc 3.13 that is not available. It is understood that code
that performs installation is poor style for scientific programming; this package
concerns software ecosystem management and must be able to programmatically
define the ecosystem for evaluation.
vjcitn/BiocBuildTools documentation built on March 15, 2024, 4:19 a.m.
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| fulfill_deps | R Documentation |
use BiocManager::install to get any unavailable dependencies as defined by BiocPkgTools
Description
use BiocManager::install to get any unavailable dependencies as defined by BiocPkgTools
Usage
fulfill_deps(pkg, depdf = NULL, exclude = "KEGG.db", ...)
Arguments
pkg |
character(1) name of package |
depdf |
a data.frame like the output of |
exclude |
character() of uninstalled packages to be ignored – BiocManager::install is slow to deal with an unavailable package |
... |
passed to BiocManager::install |
Note
Function is used only for side-effect of installation. exclude defaults to
'KEGG.db' because in Bioc 3.13 that is not available. It is understood that code
that performs installation is poor style for scientific programming; this package
concerns software ecosystem management and must be able to programmatically
define the ecosystem for evaluation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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