Man pages for vjcitn/BiocBuildTools
Bioconductor software ecosystem building tools

absentlist packages absent from current installation
add_dependencies-PackageSet-methodmethod for adding dependencies to PackageSet as determined by...
bbs_check_builtnot exported, rely instead on rcmdcheck do check_built and...
bcclist_to_dataframeshelper function for extracting BiocCheck outputs
bco2dfconvert BiocCheck output (just error and warning) to list of...
bioc_coresetdefine a small collection of packages of interest
bioc_software_packagelist_oldget vector of Bioc software package names
build1prepare and build a package tarball, not exported because we...
build1_with_buildsinkrun build1 and capture the R CMD build log
build_sqlite_dbuse outputs of get_checks and get_bcc to build a database of...
check_PackageSetlongrunning R CMD check and BiocCheck of every package in a...
combine_status_dbsadd records from 'incoming' database to 'target' database
demo_bcchk_outa list of BiocCheck::BiocCheck results for demonstration...
demo_rcmdcheck_outa list of rcmdcheck::rcmdcheck results for demonstration...
display_eventssimple app to present data on events gathered into a SQLite...
dot-bco2dfhelper for bco2df
fulfill_depsuse BiocManager::install to get any unavailable dependencies...
full_dep_optsa vector listing the key dependencies with correct...
get_bccuse bco2df to acquire limited data frames from BiocCheck...
get_checksrun rcmdcheck on all sources associated with a PackageSet and...
get_checks2run rcmdcheck and BiocCheck on all sources associated with a...
getpkuse HTTPS to clone a package from Bioconductor git
installed_ra vector of package names needed for a fairly complete BBS...
last_commit_dateuse gert to get last commit date for a repo
local_gits_behind_bioccheck all repos in a folder for version entry less than the...
local_gits_with_uninstalled_dependenciesnot clear that this is needed provide a list of packages for...
PackageSetconstructor for PackageSet instances
populate_local_gitsuse git via BiocBBSpack::getpk to retrieve sources into a...
rcclist_to_dataframesproduce list of data.frames for storage of R CMD check...
status_db_initinitialize a status database
update_gitsattempt to identify packages that have had pushes since last...
update_status_dbadd a dataframe, optionally purging related obsolete records,...
vjcitn/BiocBuildTools documentation built on March 15, 2024, 4:19 a.m.