get_checks2: run rcmdcheck and BiocCheck on all sources associated with a...

In vjcitn/BiocBuildTools: Bioconductor software ecosystem building tools

run rcmdcheck and BiocCheck on all sources associated with a PackageSet and drop the RDS outputs in separate folders

Description

run rcmdcheck and BiocCheck on all sources associated with a PackageSet and drop the RDS outputs in separate folders

Usage

get_checks2(
  pkgset,
  sources.folder,
  checks.destination,
  bcchecks.destination,
  bcobj.destination,
  shuffle.pks = FALSE,
  BPPARAM = bpparam(),
  BPOPTIONS = bpoptions()
)

Arguments

pkgset	instance of PackageSet
sources.folder	path to git repos
checks.destination	path to folder holding RDS of rcmdcheck output
bcchecks.destination	character(1) path to a writeable folder where BiocCheck logs are written
bcobj.destination	character(1) path to a folder where RDS files with data frames are written
shuffle.pks	logical(1) if TRUE the packages are randomized before checking
BPPARAM	defaults to bpparam()
BPOPTIONS	defaults to bpoptions()

Note

returns NULL (if all artifacts are already present in destinations) or list of NULLs

vjcitn/BiocBuildTools documentation built on March 15, 2024, 4:19 a.m.