Man pages for vjcitn/HumanTranscriptomeCompendium
Tools to work with a Compendium of 181000 human transcriptome sequencing studies

addRDadd gene-level rowData derived from transcript level...
ca43kapp to survey 43000 cancer transcriptomes
get_ds4841return instance of ssrch::DocSet with metadata on 4841 human...
htx_appexplore SRA metadata
htx_loadload a SummarizedExperiment shell for the Human Transcriptome...
htx_query_by_study_accessionretrieve 'restfulSE' SummarizedExperiment instance for...
htx_query_by_textsubset compendium through keyword lookup
HumanTranscriptomeCompendium.colnamescharacter vector of available samples in HDF cloud assay...
load_bigrnaFilesobtain listing of contents of BigRNA compendium (salmon runs)
load_experTableobtain listing of experiments and submission date/time in...
load_studTableobtain listing of all studies in compendium
path_doc4842return path to metadata csvs in zip file
procExpToGeneacquire a single sample from bigRNA compendium specified by...
tx2gene_gencode27generate a data.frame mapping gencode 27 ensembl transcript...
uniqueAcc_120518experiment accessions available in compendium as of may 12...
vjcitn/HumanTranscriptomeCompendium documentation built on Oct. 13, 2019, 2:05 p.m.