Man pages for vjcitn/HumanTranscriptomeCompendium
Tools to work with a Compendium of 181000 human transcriptome sequencing studies
| addRD | add gene-level rowData derived from transcript level... |
| ca43k | app to survey 43000 cancer transcriptomes |
| get_ds4841 | return instance of ssrch::DocSet with metadata on 4841 human... |
| htx_app | explore SRA metadata |
| htx_load | load a SummarizedExperiment shell for the Human Transcriptome... |
| htx_query_by_study_accession | retrieve 'restfulSE' SummarizedExperiment instance for... |
| htx_query_by_text | subset compendium through keyword lookup |
| HumanTranscriptomeCompendium.colnames | character vector of available samples in HDF cloud assay... |
| load_bigrnaFiles | obtain listing of contents of BigRNA compendium (salmon runs) |
| load_experTable | obtain listing of experiments and submission date/time in... |
| load_studTable | obtain listing of all studies in compendium |
| path_doc4842 | return path to metadata csvs in zip file |
| procExpToGene | acquire a single sample from bigRNA compendium specified by... |
| tx2gene_gencode27 | generate a data.frame mapping gencode 27 ensembl transcript... |
| uniqueAcc_120518 | experiment accessions available in compendium as of may 12... |
