htx_query_by_text: subset compendium through keyword lookup

In vjcitn/HumanTranscriptomeCompendium: Tools to work with a Compendium of 181000 human transcriptome sequencing studies

Description

subset compendium through keyword lookup

Usage

htx_query_by_text(query, ..., tryGrep = TRUE, ignore.case = TRUE)

Arguments

query	character(1) to be found in ls(ssrch::kw2docs(get_ds4841()))
...	passed to 'htx_query_by_study_accession'
tryGrep	logical(1) if TRUE, 'query' does not match any keyword directly, it will be treated as a regular expression and the vector of keywords will be grepped for pattern 'query'; defaults to TRUE
ignore.case	logical(1) used when tryGrep is TRUE, defaults to TRUE

Value

SummarizedExperiment instance

Note

The DocSet instance returned by 'get_ds4841()' is used. Lookups are case-sensitive. Look carefully at note for 'htx_query_by_study_accession' to understand logic of incrementing metadata on a given input SummarizedExperiment.

Examples

htx_query_by_text("HNRNPC")

vjcitn/HumanTranscriptomeCompendium documentation built on Jan. 26, 2020, 11:11 a.m.