htx_query_by_study_accession: retrieve 'restfulSE' SummarizedExperiment instance for...

Description Usage Arguments Value Note Examples

View source: R/htx_query.R

Description

retrieve 'restfulSE' SummarizedExperiment instance for selected studies in htx compendium

Usage

1

Arguments

studies

character vector of study accessions

htxSE

SummarizedExperiment instance, typically the result of htx_load(), which we don't want to repeat needlessly

...

passed to 'htx_load', ignored if 'se' is nonmissing

Value

SummarizedExperiment instance

Note

This function was designed to perform a single query on a 'fresh' compendium image from 'htx_load()'. However, one could consider iterating the process to build up metadata on multiple series of studies. This is not likely to succeed without careful manipulation of the colData of the input SummarizedExperiment. A message will be written if the input SummarizedExperiment appears to be other than a 'fresh' 'htx_load' result.

Examples

1

vjcitn/HumanTranscriptomeCompendium documentation built on Jan. 26, 2020, 11:11 a.m.