API for vjcitn/MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor

Global functions
$,MultiAssayExperiment-method Man page
$<-,MultiAssayExperiment-method Man page
DollarNames.MultiAssayExperiment Source code
ExperimentList Man page Source code
ExperimentList-class Man page
MatchedAssayExperiment Man page Source code
MatchedAssayExperiment-class Man page
MultiAssayExperiment Man page Source code
MultiAssayExperiment-class Man page
MultiAssayExperiment-helpers Man page
MultiAssayExperiment-methods Man page
[,MultiAssayExperiment,ANY,ANY,ANY-method Man page
[,MultiAssayExperiment,ANY-method Man page
[[,MultiAssayExperiment,ANY,ANY-method Man page
[[<-,MultiAssayExperiment,ANY,ANY-method Man page
allIn Source code
anyReplicated Man page
anyReplicated,MultiAssayExperiment-method Man page
assay,ANY,missing-method Man page
assay,ExperimentList,character-method Man page
assay,ExperimentList,missing-method Man page Man page
assay,ExperimentList,numeric-method Man page
assay,MultiAssayExperiment,character-method Man page
assay,MultiAssayExperiment,missing-method Man page
assay,MultiAssayExperiment,numeric-method Man page
assays,ExperimentList-method Man page
assays,MultiAssayExperiment-method Man page
c,MultiAssayExperiment-method Man page
checkEqualPrimaries Source code
checkExperimentList Source code
checkExperimentListNames Source code
checkGRL Source code
checkOverlapsAny Source code
checkPrimaryOrder Source code
checkSampleMapNamesClass Source code
checkSampleNames Source code
colData,MultiAssayExperiment-method Man page
colData<-,MultiAssayExperiment,DataFrame-method Man page
complete.cases,MultiAssayExperiment-method Man page
dimnames,ExperimentList-method Man page
dimnames,MultiAssayExperiment-method Man page
duplicated Man page
duplicated,MultiAssayExperiment-method Man page
experiments Man page
experiments,MultiAssayExperiment-method Man page
experiments<- Man page
experiments<-,MultiAssayExperiment,ExperimentList-method Man page
generateMap Source code
getHits Source code
getMethErr Source code
harmonize Source code
hasAssay Man page Source code
hasOldAPI Source code
hasRowRanges Man page
hasRowRanges,ExperimentList-method Man page
hasRowRanges,MultiAssayExperiment-method Man page
intersectColumns Man page Man page Source code
intersectRows Man page Man page Source code
isEmpty,MultiAssayExperiment-method Man page
length,MultiAssayExperiment-method Man page
listToMap Man page Source code
longFormat Man page
longFormat,ANY-method Man page
longFormat,ExperimentList-method Man page
longFormat,MultiAssayExperiment-method Man page
mapToList Man page Source code
matchReorderSub Source code
mergeReplicates Man page Man page
mergeReplicates,ANY-method Man page
mergeReplicates,ExperimentList-method Man page
mergeReplicates,MultiAssayExperiment-method Man page
metadata,MultiAssayExperiment-method Man page
metadata<-,MultiAssayExperiment-method Man page
miniACC Man page
names,MultiAssayExperiment-method Man page
prepMultiAssay Man page Source code
rearrangeMap Source code
replicated Man page Man page
replicated,MultiAssayExperiment-method Man page
rowIdx Source code
sEmpty Source code
sampleMap Man page
sampleMap,MultiAssayExperiment-method Man page
sampleMap<- Man page
sampleMap<-,MultiAssayExperiment,DataFrame-method Man page
show,ExperimentList-method Man page
show,MultiAssayExperiment-method Man page
splitArgs Source code
subset Man page
subsetBy Man page
subsetByAssay Man page Man page
subsetByAssay,ExperimentList-method Man page
subsetByAssay,MultiAssayExperiment-method Man page
subsetByColData Man page Man page
subsetByColData,MultiAssayExperiment,ANY-method Man page
subsetByColData,MultiAssayExperiment,character-method Man page
subsetByColumn Man page Man page
subsetByColumn,ExperimentList,List-method Man page
subsetByColumn,ExperimentList,list-method Man page
subsetByColumn,ExperimentList,logical-method Man page
subsetByColumn,MultiAssayExperiment,ANY-method Man page
subsetByRow Man page Man page
subsetByRow,ExperimentList,ANY-method Man page
subsetByRow,ExperimentList,List-method Man page
subsetByRow,ExperimentList,list-method Man page
subsetByRow,ExperimentList,logical-method Man page
subsetByRow,MultiAssayExperiment,ANY-method Man page
subsetCOLS Source code
subsetMultiAssayExperiment Source code
subsetROWS Source code
testMethodsTable Source code
tryRowRanges Source code
uniqueNamesInAssays Source code
uniqueSortIdentical Source code
uniteDF Source code
updateObject,MultiAssayExperiment-method Man page
upsetSamples Man page Source code
validExperimentList Source code
validMatchedAssayExperiment Source code
validMultiAssayExperiment Source code
wideFormat Man page
wideFormat,ANY-method Man page
wideFormat,MultiAssayExperiment-method Man page
vjcitn/MultiAssayExperiment documentation built on Dec. 30, 2017, 4:33 a.m.