upsetSamples: Create a generalized Venn Diagram analog for sample...

In vjcitn/MultiAssayExperiment: Software for the integration of multi-omics experiments in Bioconductor

Description

Create a generalized Venn Diagram analog for sample membership in multiple assays, using the upset algorithm in UpSetR

Usage

upsetSamples(MultiAssayExperiment, nsets = length(MultiAssayExperiment),
  nintersects = 24, order.by = "freq", ...)

Arguments

MultiAssayExperiment	instance of MultiAssayExperiment-class
nsets	integer number of sets to analyze
nintersects	Number of intersections to plot. If set to NA, all intersections will be plotted.
order.by	How the intersections in the matrix should be ordered by. Options include frequency (entered as "freq"), degree, or both in any order.
...	parameters passed to upset

Value

Produces a visualization of set intersections using the UpSet matrix design

Author(s)

Vincent J Carey

Examples

data(miniACC)
upsetSamples(miniACC)

vjcitn/MultiAssayExperiment documentation built on May 3, 2019, 6:13 p.m.