upsetSamples: Create a generalized Venn Diagram analog for sample...

Description Usage Arguments Value Author(s) Examples

View source: R/upsetSamples.R

Description

Create a generalized Venn Diagram analog for sample membership in multiple assays, using the upset algorithm in UpSetR

Usage

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upsetSamples(MultiAssayExperiment, nsets = length(MultiAssayExperiment),
  nintersects = 24, order.by = "freq", ...)

Arguments

MultiAssayExperiment

instance of MultiAssayExperiment-class

nsets

integer number of sets to analyze

nintersects

Number of intersections to plot. If set to NA, all intersections will be plotted.

order.by

How the intersections in the matrix should be ordered by. Options include frequency (entered as "freq"), degree, or both in any order.

...

parameters passed to upset

Value

Produces a visualization of set intersections using the UpSet matrix design

Author(s)

Vincent J Carey

Examples

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vjcitn/MultiAssayExperiment documentation built on Dec. 30, 2017, 4:33 a.m.