TFtargs: gadget to help sort through tags naming TFs

In vjcitn/TFutils: TFutils

Description

gadget to help sort through tags naming TFs

Usage

TFtargs(
  gscoll = TFutils::tftColl,
  initTF = "VDR_Q3",
  gwcat = TFutils::gwascat_hg19_chr17,
 
    gadtitle = "Search for a TF; its targets will be checked for mapped status in GWAS catalog"
)

Arguments

gscoll	a GSEABase GeneSetCollection
initTF	character(1) initial TF string for app
gwcat	GRanges-like structure with GWAS catalog information
gadtitle	character(1) a title for the gadget panel

Value

on app conclusion a data.frame is returned

Note

Will use TFutils::gwascat_hg19_chr17 to look for 'MAPPED_GENE' field entries matching targets, also hardcoded to use org.Hs.eg.db to map symbols

Examples

if (interactive()) TFtargs()

vjcitn/TFutils documentation built on Oct. 25, 2021, 3:01 p.m.