get_rslocs_38: utility to obtain location etc. for rsids of SNPs
In vjcitn/TFutils: TFutils
Description
Usage
Arguments
Note
Examples
Description
utility to obtain location etc. for rsids of SNPs
Usage
1
get_rslocs_38(rsids = c("rs6060535", "rs56116432"))
Arguments
rsids
character vector of dbSNP identifiers
Note
Uses rest.ensembl.org, posting to variant_recorder/homo_sapiens.
Parses result minimally, using only the first SPDI to obtain
location information, adding 1 as ensembl genomic coordinates
are zero-based.
Examples
1
if (interactive()) get_rslocs_38() # see https://stat.ethz.ch/pipermail/bioc-devel/2020-October/017263.html
vjcitn/TFutils documentation built on Oct. 25, 2021, 3:01 p.m.
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Description Usage Arguments Note Examples
Description
utility to obtain location etc. for rsids of SNPs
Usage
1 | get_rslocs_38(rsids = c("rs6060535", "rs56116432"))
|
Arguments
rsids |
character vector of dbSNP identifiers |
Note
Uses rest.ensembl.org, posting to variant_recorder/homo_sapiens. Parses result minimally, using only the first SPDI to obtain location information, adding 1 as ensembl genomic coordinates are zero-based.
Examples
1 | if (interactive()) get_rslocs_38() # see https://stat.ethz.ch/pipermail/bioc-devel/2020-October/017263.html
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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