importFIMO: import a FIMO bed-like file@importFrom utils read.delim

In vjcitn/TFutils: TFutils

Description

import a FIMO bed-like file@importFrom utils read.delim

Usage

## S4 method for signature 'TabixFile,GRanges'
importFIMO(src, parms, ...)

## S4 method for signature 'character,missing'
importFIMO(src, parms, ...)

Arguments

src	TabixFile instance
parms	a GRanges instance delimiting the import; multiple GRanges can be used
...	passed to GenomicRanges::GRanges

Value

instance of GRanges

Examples

if (requireNamespace("Rsamtools")) {
 tf = Rsamtools::TabixFile(system.file("M5946_1/chr1.bed.gz", package="TFutils"))
 importFIMO(tf, GenomicRanges::GRanges("chr1", IRanges::IRanges(1e6,11e6)))
 }

vjcitn/TFutils documentation built on Oct. 25, 2021, 3:01 p.m.