addsyms: add gene symbols to a GRanges that uses ensembl identifiers
In vjcitn/TxRegInfra2: Metadata management for multiomic specification of transcriptional regulatory networks, version 2
Description
Usage
Arguments
Value
Note
Description
add gene symbols to a GRanges that uses ensembl identifiers
Usage
1
addsyms(x, EnsDb = EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75)
Arguments
x
a GRanges assumed to have mcols element 'gene_id' with ensembl gene identifiers
EnsDb
an instance of EnsDb
Value
a GRanges with mcols column 'symbol'
Note
At this time no checking of reference genome consistency is performed.
vjcitn/TxRegInfra2 documentation built on Jan. 1, 2021, 12:41 p.m.
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Description Usage Arguments Value Note
Description
add gene symbols to a GRanges that uses ensembl identifiers
Usage
1 | addsyms(x, EnsDb = EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75)
|
Arguments
x |
a GRanges assumed to have mcols element 'gene_id' with ensembl gene identifiers |
EnsDb |
an instance of EnsDb |
Value
a GRanges with mcols column 'symbol'
Note
At this time no checking of reference genome consistency is performed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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