grConverter: convert a GRanges to a JSON query for mongodb
In vjcitn/TxRegInfra2: Metadata management for multiomic specification of transcriptional regulatory networks, version 2
Description
Usage
Arguments
Value
Examples
Description
convert a GRanges to a JSON query for mongodb
Usage
1
2
3
4
grConverter(
queryGRange,
cfields = c(chrom = "chrom", start = "chromStart", end = "chromEnd")
)
Arguments
queryGRange
a GRanges-class instance of length 1
cfields
a named character(3) vector with names 'chrom', 'start',
'end'; the element values will be used to name document fields in the query
Value
a JSON document generated by rjson::toJSON
Examples
1
2
gr = GenomicRanges::GRanges('chr1', IRanges(1,25000))
grConverter(gr, cfields=c(chrom='chr', start='start', end='end'))
vjcitn/TxRegInfra2 documentation built on Jan. 1, 2021, 12:41 p.m.
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Description Usage Arguments Value Examples
Description
convert a GRanges to a JSON query for mongodb
Usage
1 2 3 4 | grConverter(
queryGRange,
cfields = c(chrom = "chrom", start = "chromStart", end = "chromEnd")
)
|
Arguments
queryGRange |
a |
cfields |
a named character(3) vector with names 'chrom', 'start', 'end'; the element values will be used to name document fields in the query |
Value
a JSON document generated by rjson::toJSON
Examples
1 2 | gr = GenomicRanges::GRanges('chr1', IRanges(1,25000))
grConverter(gr, cfields=c(chrom='chr', start='start', end='end'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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