two_sample_surv_setup: two-sample survival comparison dependent on mutation present...

In vjcitn/YESCDS: Cancer data science activities for CZI YES for CURE collaboration

two-sample survival comparison dependent on mutation present in gene

Description

two-sample survival comparison dependent on mutation present in gene

Usage

two_sample_surv_setup(sym, se, timevar = "OS.Time", eventvar = "OS.event")

Arguments

sym	character(1) HUGO symbol
se	a SummarizedExperiment instance with ragged mutation matrix as assay
timevar	character(1) variable found in colData(se) recording time to event
eventvar	character(1) variable found in colData(se) recording death or censoring

Examples

data(brcamutSE)
ss = two_sample_surv_setup("TTN", brcamutSE)
summary(ss)
plot(ss, lty=1:2, lwd=2)
legend(500,.4,  lty=1:2, lwd=2, legend=c("TTN WT", "TTN Mut"))

vjcitn/YESCDS documentation built on April 16, 2024, 1:03 p.m.