vjcitn/biocMultiAssay
Software for the integration of multi-omics experiments in Bioconductor

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Search the vjcitn/biocMultiAssay package
Vignettes
Functions
208
Source code
45
Man pages
17
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vjcitn/biocMultiAssay: Software for the integration of multi-omics experiments in Bioconductor
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API

API for vjcitn/biocMultiAssay
Software for the integration of multi-omics experiments in Bioconductor

Global functions
$,MultiAssayExperiment-method Man page
$<-,MultiAssayExperiment-method Man page
.DollarNames.MultiAssayExperiment Source code
.allIn Source code
.checkClass Source code
.checkDimnames Source code
.checkEqualPrimaries Source code
.checkExperimentList Source code
.checkExperimentListClasses Source code
.checkExperimentListNames Source code
.checkFixSampleMap Source code
.checkOverlapsAny Source code
.checkPrimaryOrder Source code
.checkSampleMapNamesClass Source code
.checkSampleNames Source code
.chr2fxn Source code
.doMatching Source code
.dropEmpty Source code
.emptyAssays Source code
.fillEmptyExps Source code
.getDim Source code
.getHits Source code
.getMethErr Source code
.getRangedData Source code
.harmonize Source code
.hasOldAPI Source code
.id_sort_uniq Source code
.isEmpty Source code
.load_HDF5Array_package Source code
.longFormatANY Source code
.longFormatElist Source code
.mapOrderPrimary Source code
.matchAddColData Source code
.matchReorderSub Source code
.mergeColData Source code
.mergeMAE Source code
.metadataCOLS Source code
.metasize Source code
.msg Source code
.normarg_verbose Source code
.read_HDF5MultiAssayExperiment Source code
.rowIdx Source code
.sampleMapFromData Source code
.sampleMapFromExisting Source code
.serialize_HDF5MultiAssayExperiment Source code
.setNames Source code
.smapColumnCoerce Source code
.sortMetadata Source code
.splitArgs Source code
.subsetCOLS Source code
.subsetMultiAssayExperiment Source code
.subsetROWS Source code
.testMethodsTable Source code
.tryRowRanges Source code
.uniqueNamesInAssays Source code
.uniqueSortIdentical Source code
.validExperimentList Source code
.validMatchedAssayExperiment Source code
.validMultiAssayExperiment Source code
.warning Source code
.warnnomatch Source code
.wideFormatANY Source code
.write_HDF5MultiAssayExperiment Source code
.write_h5_dimnames Source code
DataFrame Man page
ExperimentList Man page Source code
ExperimentList-class Man page
HDF5MultiAssayExperiment Man page
MatchedAssayExperiment Man page Source code
MatchedAssayExperiment-class Man page
MultiAssayExperiment Man page Source code
MultiAssayExperiment-class Man page
MultiAssayExperiment-helpers Man page
MultiAssayExperiment-methods Man page
MultiAssayExperiment-package Man page
MultiAssayExperimentToMAF Man page Source code
[,MultiAssayExperiment,ANY,ANY,ANY-method Man page
[,MultiAssayExperiment,ANY-method Man page
[<-,MultiAssayExperiment,ANY,ANY,ANY-method Man page
[[,MultiAssayExperiment,ANY,ANY-method Man page
[[<-,MultiAssayExperiment,ANY,ANY-method Man page
anyReplicated Man page
anyReplicated,MultiAssayExperiment-method Man page
assay,ANY,missing-method Man page
assay,ExperimentList,character-method Man page
assay,ExperimentList,missing-method Man page
assay,ExperimentList,numeric-method Man page
assay,MultiAssayExperiment,character-method Man page
assay,MultiAssayExperiment,missing-method Man page
assay,MultiAssayExperiment,numeric-method Man page
assays,ExperimentList-method Man page
assays,MultiAssayExperiment-method Man page
c,MultiAssayExperiment-method Man page
coerce,List,ExperimentList-method Man page
coerce,List,MultiAssayExperiment-method Man page
coerce,MultiAssayExperiment,MatchedAssayExperiment-method Man page
coerce,list,ExperimentList-method Man page
coerce,list,MultiAssayExperiment-method Man page
coerce-ExperimentList Man page
coerce-MultiAssayExperiment Man page
coerceToExperimentList Source code
colData,MultiAssayExperiment-method Man page
colData<-,MultiAssayExperiment,ANY-method Man page
colData<-,MultiAssayExperiment,DataFrame-method Man page
colnames,ExperimentList-method Man page
colnames<-,MultiAssayExperiment,List-method Man page
colnames<-,MultiAssayExperiment,list-method Man page
complete.cases,MultiAssayExperiment-method Man page
dimnames,ExperimentList-method Man page
dimnames,MultiAssayExperiment-method Man page
drops Man page
drops,MultiAssayExperiment-method Man page
drops<- Man page
drops<-,MultiAssayExperiment-method Man page
experiments Man page
experiments,MultiAssayExperiment-method Man page
experiments<- Man page
experiments<-,MultiAssayExperiment,ExperimentList-method Man page
experiments<-,MultiAssayExperiment,List-method Man page
exportClass Man page
exportClass,MultiAssayExperiment-method Man page
getWithColData Man page Source code
hasAssay Man page Source code
hasRowRanges Man page
hasRowRanges,ExperimentList-method Man page
hasRowRanges,MultiAssayExperiment-method Man page
intersectColumns Man page Source code
intersectRows Man page Source code
isEmpty,ExperimentList-method Man page
isEmpty,MultiAssayExperiment-method Man page
length,MultiAssayExperiment-method Man page
listToMap Man page Source code
loadHDF5MultiAssayExperiment Man page Source code
longFormat Man page Source code
makeHitList Man page Source code
makeMatchList Man page
mapToList Man page Source code
mergeReplicates Man page
mergeReplicates,ANY-method Man page
mergeReplicates,ExperimentList-method Man page
mergeReplicates,MultiAssayExperiment-method Man page
metadata,MultiAssayExperiment-method Man page
metadata<-,MultiAssayExperiment-method Man page
miniACC Man page
names,MultiAssayExperiment-method Man page
names<-,MultiAssayExperiment-method Man page
prepMultiAssay Man page Source code
reexports Man page
renameColname Man page Source code
renamePrimary Man page Source code
replicated Man page
replicated,MultiAssayExperiment-method Man page
replicates Man page
replicates,MultiAssayExperiment-method Man page
rownames,ExperimentList-method Man page
sampleMap Man page
sampleMap,MultiAssayExperiment-method Man page
sampleMap<- Man page
sampleMap<-,MultiAssayExperiment,ANY-method Man page
sampleMap<-,MultiAssayExperiment,DataFrame-method Man page
saveHDF5MultiAssayExperiment Man page Source code
show,ExperimentList-method Man page
show,MultiAssayExperiment-method Man page
showReplicated Man page
showReplicated,MultiAssayExperiment-method Man page
splitAssays Man page
splitAssays,MultiAssayExperiment-method Man page
subset Man page
subsetBy Man page
subsetByAssay Man page
subsetByAssay,ExperimentList-method Man page
subsetByAssay,MultiAssayExperiment-method Man page
subsetByColData Man page
subsetByColData,MultiAssayExperiment,ANY-method Man page
subsetByColData,MultiAssayExperiment,character-method Man page
subsetByColumn Man page
subsetByColumn,ExperimentList,List-method Man page
subsetByColumn,ExperimentList,list-method Man page
subsetByColumn,ExperimentList,logical-method Man page
subsetByColumn,MultiAssayExperiment,ANY-method Man page
subsetByRow Man page
subsetByRow,ExperimentList,ANY-method Man page
subsetByRow,ExperimentList,List-method Man page
subsetByRow,ExperimentList,list-method Man page
subsetByRow,ExperimentList,logical-method Man page
subsetByRow,MultiAssayExperiment,ANY-method Man page
updateObject,MultiAssayExperiment-method Man page
upsetSamples Man page Source code
wideFormat Man page Source code
vjcitn/biocMultiAssay documentation built on Nov. 24, 2024, 3:04 a.m.

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