MultiAssayExperimentToMAF: Convert MultiAssayExperiment to MAF class
In vjcitn/biocMultiAssay: Software for the integration of multi-omics experiments in Bioconductor
View source: R/MultiAssayExperimentToMAF.R
MultiAssayExperimentToMAF R Documentation
Convert MultiAssayExperiment to MAF class
Description
Take a MultiAssayExperiment object with specific mutation
assays and convert these into a maftools representation. The names
provided via synAssay and nonSynAssay must match exactly those
assays in the MultiAssayExperiment.
Usage
MultiAssayExperimentToMAF(x, synAssay = "maf_syn", nonSynAssay = "maf_nonSyn")
Arguments
x
A MultiAssayExperiment object
synAssay
character(1) The name of the ExperimentList element in the
MultiAssayExperiment that identifies synonymous variant classifications.
nonSynAssay
character(1) The name of the ExperimentList element in
the MultiAssayExperiment that identifies non-synonymous variant
classifications.
vjcitn/biocMultiAssay documentation built on Feb. 7, 2024, 11:20 a.m.
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View source: R/MultiAssayExperimentToMAF.R
| MultiAssayExperimentToMAF | R Documentation |
Convert MultiAssayExperiment to MAF class
Description
Take a MultiAssayExperiment object with specific mutation
assays and convert these into a maftools representation. The names
provided via synAssay and nonSynAssay must match exactly those
assays in the MultiAssayExperiment.
Usage
MultiAssayExperimentToMAF(x, synAssay = "maf_syn", nonSynAssay = "maf_nonSyn")
Arguments
x |
A |
synAssay |
character(1) The name of the |
nonSynAssay |
character(1) The name of the |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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